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Showing :
volcano plot
•
reset
1
vote
1
reply
599
views
diffBind volcano plot error
DiffBind
volcano plot
software error
4.5 years ago
rbronste
▴ 60
0
votes
2
replies
943
views
Need help cprrecting overlappinge genes on valcano plot
volcano plot
rna seq
updated 4.7 years ago by
Michael Love
41k • written 4.7 years ago by
adeler001
• 0
0
votes
4
replies
1.3k
views
Volcano Plot after using Treat Function
Volcano plot
Parameters
updated 6.6 years ago by
Gordon Smyth
50k • written 6.6 years ago by
Sanches
• 0
2
votes
1
reply
1.2k
views
Strange limma plot
limma
volcano plot
updated 7.0 years ago by
Gordon Smyth
50k • written 7.0 years ago by
yul
• 0
0
votes
9
replies
1.7k
views
Volcano plot non-numeric argument error
volcano plot
edgr
7.2 years ago
elena.capel
▴ 10
3
votes
2
replies
1.3k
views
Differential gene expression of Microarray data
microarray
limma
volcano plot
updated 9.5 years ago by
Gordon Smyth
50k • written 9.5 years ago by
jyoti_cad
• 0
6 results • Page
1 of 1
Recent ...
Replies
Comment: Assist me in determining whether the analysis process using the limma package ha
by
SSSJec
• 0
Thanks for your reply. I understand the principle of adjusted P-values, but I still want to address that issue. The description of the G…
Comment: Why p value inconsistent when using different number of pathway score?
by
Gordon Smyth
50k
Just a note that fgsea is not classical GSEA. The classical GSEA as described in the Subramanian paper and other papers from the Broad Inst…
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
Chris
• 0
Thank you! The resource I use may mispresent the requirement input of fgsea.
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
alserg
▴ 260
fgsea doesn't require the presence of deferentially expressed genes, it takes as the input the differential expression-based ranking of all…
Comment: Why p value inconsistent when using different number of pathway score?
by
Chris
• 0
Thanks Robert for an educative response!
Votes
Answer: Improving the design matrices vignette in RNAseq123
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
Comment: Why p value inconsistent when using different number of pathway score?
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bioinf
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